If you edit the RetroArch.ini file in RocketLauncher\Modules\RetroArch you can specify the location for the MAME BIOS files.
Add these two lines:
[mame]
BIOS_Roms_Folder=..\Emulators\RetroArch\system\mame\roms (or the path to your MAME/MESS BIOS files)
Use the mame core in RetroArch
This way you can keep all of the BIOS files in one location.
You should be able to use RetroArch and the MAME core for all of the old systems like Bally Astrocade, Arcadia 2001, Entex, Channel F etc.